Theoretical Biology

Publications

Recent preprints
1. 270. R. Zapién-Campos, F. Bansept and A. Traulsen
  Inferring interactions from microbiome data
  bioRxiv in edited by (2023) |
2. 284. C. Morison, M. Fic, T. Marcou, J. Mohamadichamgavi, J. Redondo Antón, G. Sayyar, A. Stein, F. Bastian, H. Krakovská, N. Krishnan, D. Pires, M. R. Satouri, F. J. Thomsen, K. Tjikundi and W. Ali
  Public Goods Games in Disease Evolution and Spread
  arXiv in edited by (2024) |
3. 289. N. Puzović and J. Y. Dutheil
  When is gene expression noise advantageous?
  bioRxiv in edited by (2023) |
2024
1. 281. Z. Khomarbaghi, W. Y. Ngan, G. B. Ayan, S. Lim, G. Dechow-Seligmann, P. Nandy and J. Gallie
  Large-scale duplication events underpin population-level flexibility in tRNA gene copy number in Pseudomonas fluorescens SBW25
  Nucleic Acids Research in edited by 52, 2446-2462 (2024) |
2. 282. E. Mallmin, A. Traulsen and S. De Monte
  Chaotic turnover of rare and abundant species in a strongly interacting model community
  Proceedings of the National Academy of Sciences in edited by 121, e2312822121 (2024) |
3. 283. J. Zimmermann, A. Piecyk, M. Sieber, C. Petersen, J. Johnke, L. Moitinho-Silva, S. Kuenzel, L. Bluhm, A. Traulsen, C. Kaleta and H. Schulenburg
  Gut-associated functions are favored during microbiome assembly across a major part of C. elegans life
  mBio in edited by , in press (2024) |
4. 285. I. Dewan and H. Uecker
  Is the distribution of plasmid lengths bimodal?
  Plasmid in edited by 129, 102721 (2024) |
5. 286. V. R. Venkateswaran, C. S. Gokhale, M. Mangel and S. Eliassen
  Effects of time spent in pregnancy or brooding on immunocompetence
  Ecology and Evolution in edited by 14, e10764 (2024) |
6. 287. J. Y. Dutheil, D. Hamidi and B. Pajot
  The Site/Group Extended Data format and tools
  Genome Biology and Evolution in edited by 16, evae011 (2024) |
7. 288. A. O. Leon, E. Berríos-Caro, A. León and M. G. Clerc
  Faraday kinks connecting parametric waves in magnetic wires
  Communications in Nonlinear Science and Numerical Simulation in edited by 131, 107841 (2024) |
2023
1. 230. C. M. Saad-Roy and A. Traulsen
  Dynamics in a behavioral-epidemiological model for individual adherence to a nonpharmaceutical intervention
  Proceedings of the National Academy of Sciences in edited by 120, e2311584120 (2023) |
2. 231. S. Shah, L. M. Philipp, S. Giaimo, S. Sebens, A. Traulsen and M. Raatz
  Understanding and leveraging phenotypic plasticity during metastasis formation
  npj Systems Biology and Applications in edited by 9, 48 (2023) |
3. 232. H. Goehlich, O. Roth, M. Sieber, C. M. Chibani, A. Poehlein, J. Rajkov, H. Liesegang and C. C. Wendling
  Sub-optimal environmental conditions prolong phage epidemics in bacterial populations
  Molecular Ecology in edited by , in press (2023) |
4. 233. N. Sharma, S. Yagoobi and A. Traulsen
  Self-loops in Evolutionary Graph Theory: Friends or Foes?
  PLoS Computational Biology in edited by 19, e1011387 (2023) |
5. 234. A. Traulsen, S. A. Levin and C. M. Saad-Roy
  Individual costs and societal benefits of interventions during the COVID-19 pandemic
  Proceedings of the National Academy of Sciences in edited by 120, e2303546120 (2023) |
6. 235. M. Raatz and A. Traulsen
  Promoting extinction or minimizing growth? The impact of treatment on trait trajectories in evolving populations
  Evolution in edited by 77, 1408-1421 (2023) |
7. 236. S. Giaimo and A. Traulsen
  Generation time in stage-structured populations under fluctuating environments
  The American Naturalist in edited by 201, 404-417 (2023) |
8. 246. P. Verma, R. G. Reeves, S. Simon, M. Otto and C. S. Gokhale
  The effect of mating complexity on gene drive dynamics
  The American Naturalist in edited by 201, E1-E22 (2023) |
9. 250. P. K. Raval, W. Y. Ngan, J. Gallie and D. Agashe
  The layered costs and benefits of translational redundancy
  eLife in edited by 12, e81005 (2023) |
10. 251. P. T. van der Gulik, M. Egas, K. Kraaijeveld, N. Dombrowski, A. T. Groot, A. Spang, W. D. Hoff and J. Gallie
  On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes
  RNA Biology in edited by 20, 48-58 (2023) |
11. 260. S. Yagoobi, N. Sharma and A. Traulsen
  Categorizing update mechanisms for graph-structured metapopulations
  Journal of the Royal Society Interface in edited by 20, 20220769 (2023) |
12. 262. K. Y. Han, L. Kröger, F. Buchholz, I. Dewan, M. Quaas, H. Schulenburg and T. B. Reusch
  The economics of microbiodiversity
  Ecological Economics in edited by 204, Part A (2023) |
13. 263. M. A. Ramirez, M. Smerlak, A. Traulsen and J. Jost
  Diversity enables the jump towards cooperation for the Traveler's Dilemma
  Scientific Reports in edited by 13, 1441 (2023) |
14. 264. C. Nyhoegen and H. Uecker
  Sequential antibiotic therapy in the laboratory and in the patient
  Journal of the Royal Society Interface in edited by 20, 20220793 (2023) |
15. 265. A. Traulsen and N. Glynatsi
  The future of theoretical evolutionary game theory
  Philosophical Transactions of the Royal Society B in edited by 378, 20210508 (2023) |
16. 266. G. J. Kimmel, R. J. Beck, X. Yu, T. Veith, S. Bakhoum, P. M. Altrock and N. Andor
  Intra-tumor heterogeneity, turnover rate and karyotype space shape susceptibility to missegregation-induced extinction
  PLOS Computational Biology in edited by 19, e1010815 (2023) |
17. 267. S. Giaimo
  On two conjectures about perturbations of the stochastic growth rate
  Australian & New Zealand Journal of Statistics in edited by 65, 1-13 (2023) |
18. 272. Y. Ma, J. He, M. Sieber, J. von Frieling, I. Bruchhaus, J. F. Baines, U. Bickmeyer and T. Roeder
  The microbiome of the marine flatworm Macrostomum lignano provides fitness advantages and exhibits circadian rhythmicity
  Communications Biology in edited by 6, 289 (2023) |
19. 274. D. Hoces, G. Greter, M. Arnoldini, M. L. Stäubli, C. Moresi, A. Sintsova, S. Berent, I. Kolinko, F. Bansept, A. Woller, J. Häfliger, E. Martens, W. D. Hardt, S. Sunagawa, C. Loverdo and E. Slack
  Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
  eLife in edited by 12, e81212 (2023) |
20. 275. J. Fraboul, G. Biroli and S. De Monte
  Artificial selection of communities drives the emergence of structured interactions
  Journal of Theoretical Biology in edited by 571, 111557 (2023) |
21. 276. T. N. Sherratt, I. Dewan and J. Skelhorn
  The optimal time to approach an unfamiliar object: a Bayesian model
  Behavioral Ecology in edited by , arad032 (2023) |
22. 277. I. Dewan and H. Uecker
  A mathematician’s guide to plasmids: an introduction to plasmid biology for modellers
  Microbiology in edited by 169, 001362 (2023) |
23. 278. D. Lauenroth and C. S. Gokhale
  Theoretical assessment of persistence and adaptation in weeds with complex life cycles
  Nature Plants in edited by 9, 1267-1279 (2023) |
24. 279. N. Obeng, A. Czerwinski, D. Schütz, J. Michels, J. Leipert, F. Bansept, M. J. García García, T. Schultheiss, M. Kemlein, J. Fuß, A. Tholey, A. Traulsen, H. Sondermann and H. Schulenburg
  Bacterial c-di-GMP has a key role in establishing host–microbe symbiosis
  Nature Microbiology in edited by 8, 1809–1819 (2023) |
25. 280. C. S. Gokhale and N. Sharma
  Optimizing crop rotations via Parrondo's paradox for sustainable agriculture
  Royal Society Open Science in edited by 10, 221401 (2023) |
2022
1. 218. R. Zapién-Campos, F. Bansept, M. Sieber and A. Traulsen
  On the effect of inheritance of microbes in commensal microbiomes
  BMC Ecology and Evolution in edited by 22 (2022) |
2. 219. Y. Gao, Y. Pichugin, C. S. Gokhale and A. Traulsen
  Evolution of reproductive strategies in incipient multicellularity
  Journal of The Royal Society Interface in edited by 19 (2022) |
3. 220. F. Geoffroy, A. Traulsen and H. Uecker
  Vaccination strategies when vaccines are scarce: on conflicts between reducing the burden and avoiding the evolution of escape mutants
  Journal of The Royal Society Interface in edited by 19 (2022) |
4. 224. G. Lobinska, A. Pauzner, A. Traulsen, Y. Pilpel and M. A. Nowak
  Evolution of resistance to COVID-19 vaccination with dynamic social distancing
  Nature Human Behaviour in edited by 6, 193-206 (2022) |
5. 225. Y. Pichugin and A. Traulsen
  The possible modes of microbial reproduction are fundamentally restricted by distribution of mass between parent and offspring
  Proceedings of the National Academy of Sciences in edited by 119, e2122197119 (2022) |
6. 226. A. Traulsen, C. S. Gokhale, S. Shah and H. Uecker
  The Covid-19 pandemic: Basic insights from basic mathematical models
  Nova Acta Leopoldina in edited by 2022 (2022) |
7. 227. R. Zapién-Campos, M. Sieber and A. Traulsen
  The effect of microbial selection on the occurrence-abundance patterns of microbiomes
  Journal of The Royal Society Interface in edited by 19, 20210717 (2022) |
8. 228. S. Giaimo and A. Traulsen
  The selection force weakens with age because ageing evolves and not vice versa
  Nature Communications in edited by 13, 686 (2022) |
9. 229. P. Nandy
  The role of sigma factor competition in bacterial adaptation under prolonged starvation
  Microbiology in edited by 168 (2022) |
10. 237. N. Sharma and A. Traulsen
  Suppressors of fixation can increase average fitness beyond amplifiers of selection
  Proceedings of the National Academy of Sciences in edited by 119, e2205424119 (2022) |
11. 238. V. Ress, A. Traulsen and Y. Pichugin
  Eco-evolutionary dynamics of clonal multicellular life cycles
  Elife in edited by 11, e78822 (2022) |
12. 239. A. K. Fahimipour, F. Zeng, M. Homer, A. Traulsen, S. A. Levin and T. Gross
  Sharp thresholds limit the benefit of defector avoidance in cooperation on networks
  Proceedings of the National Academy of Sciences in edited by 119, e2120120119 (2022) |
13. 240. M. C. Ferrall-Fairbanks, A. Dhawan, B. Johnson, H. Newman, V. Volpe, C. Letson, M. Ball, A. M. Hunter, M. E. Balasis, T. Kruer, N. A. Ben-Crentsil, J. L. Kroeger, R. Balderas, R. S. Komrokji, D. A. Sallman, J. Zhang, R. Bejar, P. M. Altrock and E. Padron
  Progenitor hierarchy of chronic myelomonocytic leukemia identifies inflammatory monocytic-biased trajectory linked to worse outcomes
  Blood Cancer Discovery (AACR) in edited by 3, 536-553 (2022) |
14. 245. C. S. Gokhale, J. Bulbulia and M. Frean
  Collective narratives catalyse cooperation
  Humanities and Social Sciences Communications in edited by 9, 85 (2022) |
15. 248. A. Gupta, L. Zaman, H. Strobel, J. Gallie, A. R. Burmeister, B. Kerr, E. S. Tamar, R. Kishony and J. R. Meyer
  Host-parasite coevolution promotes innovation through deformations in fitness landscapes
  eLife in edited by 11, e76162 (2022) |
16. 249. A. Mukherjee, G. Dechow-Seligmann and J. Gallie
  Evolutionary flexibility in routes to mat formation by Pseudomonas
  Molecular Microbiology in edited by 117, 394-410 (2022) |
17. 252. M. Santer, A. Kupczok, T. Dagan and H. Uecker
  Fixation dynamics of beneficial alleles in prokaryotic polyploid chromosomes and plasmids
  Genetics in edited by 222, iyac121 (2022) |
18. 255. C. Pansch, M. Raatz, S. Comeau, T. T. Y. Hui, and C. E. Cornwall
  Influence of environmental variability on climate change impacts in marine ecosystems
  Frontiers in Marine Science in edited by 9, 994756 (2022) |
19. 258. A. de Azevedo-Lopes, R. A. Almeida, P. M. C. de Oliveira and J. J. Arenzon
  Energy-lowering and constant-energy spin flips: Emergence of the percolating cluster in the kinetic Ising model
  Physical Review E in edited by 106, 044105 (2022) |
20. 259. S. Giaimo and A. Traulsen
  Age-specific sensitivity analysis of transient, stable and stochastic growth for stage-classified populations
  Ecology and Evolution in edited by 12, e9561 (2022) |
21. 261. E. Mallmin
  Comments on: “Every variance function ... can be produced by any location-scale family ...”
  Theoretical Ecology in edited by 15, 283-284 (2022) |
22. 268. S. Giaimo
  Selection on age-specific survival: Constant versus fluctuating environment
  Theoretical Population Biology in edited by 145, 136-149 (2022) |
23. 269. V. Ress, A. Traulsen and Y. Pichugin
  Eco-evolutionary dynamics of clonal multicellular life cycles
  Elife in edited by 11, e78822 (2022) |
24. 271. D. Reyes-González, H. De Luna-Valenciano, J. Utrilla, M. Sieber, R. Peña-Miller and A. Fuentes-Hernández
  Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia
  Royal Society Open Science in edited by 9, 212008 (2022) |
25. 273. C. C. Wendling, J. Lange, H. Liesegang, M. Sieber, A. Poehlein, B. Bunk, J. Rajkov, H. Goehlich, O. Roth and M. A. Brockhurst
  Higher phage virulence accelerates the evolution of host resistance
  Proceedings of the Royal Society B in edited by 289, 20221070 (2022) |
2021
1. 195. P. Verma, R. G. Reeves and C. S. Gokhale
  A common gene drive language eases regulatory process and eco-evolutionary extensions
  BMC Ecology and Evolution in edited by 21, 156 (2021) |
2. 201. H. Uecker and S. Bonhoeffer
  Antibiotic treatment protocols revisited: The challenges of a conclusive assessment by mathematical modeling
  Journal of The Royal Society Interface in edited by 18, doi: https://doi.org/10.1098/rsif.2021.0308 (2021) |
3. 207. P. Czuppon and A. Traulsen
  Understanding evolutionary and ecological dynamics using a continuum limit
  Ecology and Evolution in edited by 11, 5857-5873 (2021) |
4. 208. M. Raatz, S. Shah, G. Chitadze, M. Brüggemann and A. Traulsen
  The impact of phenotypic heterogeneity of tumour cells on treatment and relapse dynamics
  PLoS Computational Biology in edited by 17, e1008702 (2021) |
5. 209. M. Sieber, A. Traulsen, H. Schulenburg and A. E. Douglas
  On the evolutionary origins of host-microbe associations
  Proceedings of the National Academy of Sciences in edited by 118, e2016487118 (2021) |
6. 211. S. Yagoobi and A. Traulsen
  Fixation probabilities in network structured meta-populations
  Scientific Reports in edited by 11, 1-9 (2021) |
7. 212. J. W. Lightfood, M. Dardiry, A. Kalirad, S. Giaimo, G. Eberhard, H. Witte, M. Wilecki, C. Roedelsperger, A. Traulsen and R. J. Sommer
  Sex or cannibalism: Polyphenism and kin recognition control social action strategies in nematodes
  Science Advances in edited by 7, 35 (2021) |
8. 213. F. Bansept, N. Obeng, H. Schulenburg and A. Traulsen
  Modeling host-associating microbes under selection
  The ISME Journal in edited by , 1-9 (2021) |
9. 214. N. Obeng, F. Bansept, M. Sieber, A. Traulsen and H. Schulenburg
  Evolution of microbiota-host associations: the microbe's perspective
  Trends in Microbiology in edited by 29, 779-787 (2021) |
10. 215. S. Giaimo and A. Traulsen
  Applying symmetries of elasticities in matrix population models
  Theoretical Ecology in edited by 14, 359-366 (2021) |
11. 216. A. Traulsen and M. Sieber
  Evolutionary ecology theory — microbial population structure
  Current Opinion in Microbiology in edited by 63, 216-220 (2021) |
12. 217. Y. Gao, H. J. Park, A. Traulsen and Y. Pichugin
  Evolution of irreversible somatic differentiation
  eLife in edited by 10, e66711 (2021) |
13. 222. M. Lagator, H. Uecker and P. Neve
  Adaptation at different points along antibiotic concentration gradients
  Biology Letters in edited by 17 (2021) |
14. 223. P. Czuppon, F. Blanquart, H. Uecker and F. Dèbarre
  The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations
  The American Naturalist in edited by 197 (2021) |
15. 243. F. Mafessoni, M. Lachmann and C. S. Gokhale
  On the fitness of informative cues in complex environments
  Journal of Theoretical Biology in edited by 527 (2021) |
16. 244. C. S. Gokhale, S. Giaimo and P. Remigi
  Memory shapes microbial populations
  PLoS Computational Biology in edited by 17, e1009431 (2021) |
17. 247. A. R. Burmeister, R. M. Sulivan, J. Gallie and R. E. Lenski
  Sustained coevolution of phage Lambda and Escherichia coli involves inner- as well as outer-membrane defences and counter-defences
  Microbiology in edited by 167, 001063 (2021) |
18. 256. J. Vajedsamiei, F. Melzner, M. Raatz, S. Moron Lugo and C. Pansch
  Cyclic thermal fluctuations can be burden or relief for an ectotherm depending on fluctuations' average and amplitude
  Functional Ecology in edited by 35, 2483-2496 (2021) |
19. 257. J. Vajedsamiei, F. Melzner, M. Raatz, R. Kiko, M. Khosravi and C. Pansch
  Simultaneous recording of filtration and respiration in marine organisms in response to short-term environmental variability
  Limnology and Oceanography: Methods in edited by 19, 196-209 (2021) |
2020
1. 184. H. Schenk, H. Schulenburg and A. Traulsen
  How long do Red Queen dynamics survive under genetic drift? A comparative analysis of evolutionary and eco-evolutionary models
  BMC Evolutionary Biology in edited by 20, doi.org/10.1186/s12862-019-1562-5 (2020) |
2. 193. M. Bargués-Ribera and C. S. Gokhale
  Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations
  PLoS Computational Biology in edited by 16, e1007546 (2020) |
3. 194. J. A. Denton and C. S. Gokhale
  Promoting Synthetic Symbiosis under Environmental Disturbances
  mSystems in edited by 5, e00187-20 (2020) |
4. 196. H. J. Park, C. S. Gokhale and F. Bertels
  How sequence populations persist inside a genome
  Genetics in edited by 217 (2020) |
5. 197. C. J. Rose, K. Hammerschmidt, Y. Pichugin and P. B. Rainey
  Meta-population structure and the evolutionary transition to multicellularity
  Ecology Letters in edited by 23, 1380-1390 (2020) |
6. 200. M. Santer and H. Uecker
  Evolutionary Rescue and Drug Resistance on Multicopy Plasmids
  Genetics in edited by 215, 847-868 (2020) |
7. 202. G. B. Ayan, H. J. Park and J. gallie
  The birth of a bacterial tRNA gene
  eLife in edited by 9, e57947 (2020) |
8. 204. R. Zapién-Campos, M. Sieber and A. Traulsen
  Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium
  PLoS Computational Biology in edited by 16, e1008392 (2020) |
9. 205. H. J. Park, Y. Pichugin and A. Traulsen
  Why is cyclic dominance so rare?
  eLife in edited by 9, 10.7554/eLife.57857 (2020) |
10. 206. Y. Pichugin and A. Traulsen
  Evolution of multicellular life cycles under costly fragmentation
  PLOS Computational Biology in edited by 16, e1008406 (2020) |
11. 210. L. Opasic, J. G. Scott, A. Traulsen and C. Fortmann-Grote
  CancerSim: A Cancer Simulation Package for Python 3
  Journal of Open Source Software in edited by 5, 2436 (2020) |
12. 221. C. Roecken, A. Amallraja, C. Halske, L. Opasic, A. Traulsen, H. M. Behrens, S. Krueger, A. Lui, J. Haag, J. H. Egberts, P. Rosenstiel and T. Meissner
  Multiscale heterogeneity in gastric adenocarcinoma evolution is an obstacle to precision medicine
  Genome Medicine in edited by 13, 177 (2020) |
13. 242. S. Pathak, P. Verma, S. K. Ram and S. Sengupta
  How strategy environment and wealth shape altruistic behaviour: cooperation rules affecting wealth distribution in dynamic networks
  Proceedings of the Royal Society B: Biological Sciences in edited by 287 (2020) |
2019
1. 155. H. J. Park, Y. Pichugin, W. Huang and A. Traulsen
  Population size changes and extinction risk of populations driven by mutant interactors
  Phys. Rev. E in edited by 99, 022305 (2019) |
2. 157. D. Esser, J. Lange, G. Marinos, M. Sieber, L. Best, D. Prasse, J. Bathia, M. C. Rühlemann, K. Boersch, C. Jaspers and F. Sommer
  Functions of the microbiota for the physiology of animal metaorganisms
  Journal of Innate Immunity in edited by 11, 393-404 (2019) |
3. 158. H. J. Park and C. S. Gokhale
  Ecological feedback on diffusion dynamics
  Royal Society Open Science in edited by 6, 181273 (2019) |
4. 159. J. A. Denton and C. S. Gokhale
  Synthetic Mutualism and the Intervention Dilemma
  Life in edited by 9, 15 (2019) |
5. 160. Y. Gao, A. Traulsen and Y. Pichugin
  Interacting cells driving the evolution of multicellular life cycles
  PLoS Computational Biology in edited by 15, e1006987 (2019) |
6. 161. M. Sieber, L. Pita, N. Weiland-Brauer, P. Dirksen, J. Wang, B. Mortzfeld, S. Franzenburg, R. A. Schmitz, J. F. Baines, S. Fraune, U. Hentschel, H. Schulenburg, T. C. G. Bosch and A. Traulsen
  Neutrality in the Metaorganism
  PLoS Biology in edited by 17, e3000298 (2019) |
7. 175. Y. Pichugin, H. J. Park and A. Traulsen
  Evolution of simple multicellular life cycles in dynamic environments
  Journal of the Royal Society Interface in edited by 16, 154 (2019) |
8. 176. M. Möller, L. Hindersin and A. Traulsen
  Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time
  Communications Biology in edited by 2 (2019) |
9. 177. L. Opasic, D. Zhou, B. Werner, D. Dingli and A. Traulsen
  How many samples are needed to infer truly clonal mutations from heterogenous tumours?
  BMC Cancer in edited by 19, 403 (2019) |
10. 178. L. Hindersin, B. Wu, A. Traulsen and J. Garcia
  Computation and Simulation of Evolutionary Game Dynamics in Finite Populations
  Scientific Reports in edited by 9 (2019) |
11. 179. S. Giaimo and A. Traulsen
  Generation time measures the trade-off between survival and reproduction in a life cycle
  The American Naturalist in edited by 194, 285-290 (2019) |
12. 180. H. Schaefer, A. Traulsen and S. Sebens
  Killer on the road?—cells from pancreatic preneoplastic lesions disseminate through pancreatic ducts on their way to cancer
  HepatoBiliary Surgery and Nutrition in edited by , doi: 10.21037/hbsn.2019.06.03 (2019) |
13. 181. J. Garcia and A. Traulsen
  Evolution of coordinated punishment to enforce cooperation from an unbiased strategy space
  Interface in edited by 16, 156 (2019) |
14. 182. D. Zhou, Y. Luo, D. Dingli and A. Traulsen
  The invasion of de-differentiating cancer cells into hierarchical tissues
  PLoS Computational Biology in edited by 15, e1007167 (2019) |
15. 185. Z. Zhang, D. P. Bendixsen, T. Janzen, A. W. Nolte, D. Greig and R. Stelkens
  Recombining Your Way Out of Trouble: The Genetic Architecture of Hybrid Fitness under Environmental Stress
  Molecular Biology and Evolution in edited by 37, 167-182 (2019) |
16. 192. V. R. Venkateswaran and C. S. Gokhale
  Evolutionary dynamics of complex multiple games
  Proceedings of the Royal Society B: Biological Sciences in edited by 286, 20190900 (2019) |
17. 199. J. Scire, N. Hozé and H. Uecker
  Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels
  PLoS Computational Biology in edited by 15, e1007223 (2019) |
18. 203. P. Czuppon and D. W. Rogers
  Evolution of mating types in finite populations: The precarious advantage of being rare
  Journal of Evolutionary Biology in edited by 32, 1290-1299 (2019) |
19. 241. V. R. Venkateswaran and C. S. Gokhale
  Evolutionary dynamics of complex multiple games
  Proceedings of the Royal Society B: Biological Sciences in edited by 286, 20190900 (2019) |
20. 253. J. Gallie, F. Bertels, P. Remigi, G. C. Ferguson, S. Nestmann and P. B. Rainey
  Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25
  Molecular Biology and Evolution in edited by 36, 1071-1085 (2019) |
2018
1. 147. S. Giaimo, X. Y. Li, A. Traulsen and A. Baudisch
  From stable coexistence to demographic heterogeneity
  Demographic Research in edited by 38, 197-226 (2018) |
2. 148. T. Janzen, A. Nolte and A. Traulsen
  The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites
  Evolution in edited by 72, 735-750 (2018) |
3. 149. M. A. Boettcher, J. Held-Feindt, M. Synowitz, R. Lucius, A. Traulsen and K. Hattermann
  Modeling treatment-dependent glioma growth respecting a dormant cell subpopulation
  BMC Cancer in edited by 18, 376 (2018) |
4. 150. M. Abou Chakra, S. Bumann, H. Schenk, A. Oschlies and A. Traulsen
  Immediate action is the best strategy when facing uncertain climate change
  Nature Communications in edited by 9, 2566 (2018) |
5. 151. P. Czuppon and A. Traulsen
  Fixation probabilities in populations under demographic fluctuations
  Journal of Mathematical Biology in edited by 77, 1233-1277 (2018) |
6. 152. M. Boettcher, D. Dingli, B. Werner and A. Traulsen
  Replicative cellular age distributions in compartmentalised tissues
  Journal of the Royal Society Interface in edited by 15 (2018) |
7. 153. R. Roemhild, C. S. Gokhale, P. Dirksen, C. Blake, P. Rosenstiel, A. Traulsen, D. I. Andersson and H. Schulenburg
  Cellular hysteresis as a novel principle to maximize the efficacy of antibiotic therapy
  Proceedings of the National Academy of Sciences in edited by 115, 9767-9772 (2018) |
8. 154. M. Raatz, S. Schälicke, M. Sieber, A. Wacker and U. Gaedke
  One man's trash is another man's treasure-the effect of bacteria on phytoplankton-zooplankton interactions in chemostat systems
  Limnology and Oceanography: Methods in edited by 16, 629-639 (2018) |
9. 156. S. Giaimo, J. Arranz and A. Traulsen
  Invasion and effective size of graph-structured populations
  PLoS Computational Biology in edited by 14, e1006559 (2018) |
10. 173. A. Traulsen
  Die Evolution und der Zusammenbruch von Kooperation: Wie Einzelne das Gemeinwohl gefährden können
  in Rationale Entscheidungen unter Unsicherheit, edited by Fleischer, B. and Lauterbach, R. and Pawlik, K. (2018) |
11. 174. A. Alzate, T. Janzen, D. Bonte, J. Rosindell and R. S. Etienne
  A simple spatially explicit neutral model explains the range size distribution of reef fishes
  Global Ecology and Biogeography in edited by , 1-16 (2018) |
12. 191. P. Czuppon and C. S. Gokhale
  Disentangling eco-evolutionary effects on trait fixation.
  Theoretical Population Biology in edited by 124, 93-107 (2018) |
13. 198. H. Uecker
  Effectively Evolution-proof Antibiotics?
  Trends in Microbiology in edited by 26, 969-970 (2018) |
2017
1. 137. P. M. Altrock, A. Traulsen and M. A. Nowak
  Evolutionary games on cycle graphs under strong selection
  Physical Review E in edited by 95, 022407 (2017) |
2. 138. F. Bertels, C. S. Gokhale and A. Traulsen
  Discovering complete quasispecies in bacterial genomes
  Genetics in edited by 206, 4 2149-2157 (2017) |
3. 139. D. W. Rogers, M. A. Böttcher, A. Traulsen and D. Greig
  Ribosome reinitiation can explain length-dependent translation of messenger RNA
  PLoS Computational Biology in edited by 13, e1005592 (2017) |
4. 140. B. Werner, A. Traulsen, A. Sottoriva and D. Dingli
  Detecting truly clonal alterations from multi-region profiling of tumours
  Scientific Reports in edited by 7, 44991 (2017) |
5. 141. C. S. Gokhale, A. Traulsen and G. Joop
  Social dilemma in the external immune system of the red flour beetle? It is a matter of time
  Ecology and Evolution in edited by 7, 6758-6765 (2017) |
6. 142. H. J. Park and A. Traulsen
  Extinction dynamics from meta-stable coexistences
  Physical Review E in edited by 96, 042412 (2017) |
7. 143. M. Vallier, M. Abou Chakra, L. Hindersin, M. Linnenbrink, A. Traulsen and J. F. Baines
  Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice
  BMC Evolutionary Biology in edited by 17, 87 (2017) |
8. 144. X. Y. Li, T. Lachnit, S. Fraune, T. Bosch, A. Traulsen and M. Sieber
  Temperate phages as self-replicating weapons in bacterial competition
  Journal of the Royal Society Interface in edited by 14, 137 (2017) |
9. 145. W. Huang, A. Traulsen, B. Werner, T. Hiltunen and L. Becks
  Dynamical trade-offs arise from species coevolution and lower the species diversity
  Nature Communications in edited by 8, 2059 (2017) |
10. 146. Y. Pichugin, J. Peña, P. B. Rainey and A. Traulsen
  Fragmentation modes and the evolution of life cycles
  PLoS Computational Biology in edited by 13, e1005860 (2017) |
11. 183. H. Schenk, A. Traulsen and C. S. Gokhale
  Chaotic provinces in the kingdom of the Red Queen
  Journal of Theoretical Biology in edited by 431, 1-10 (2017) |
12. 189. Y. Liu, C. S. Gokhale, P. B. Rainey and X. X. Zhang
  Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25
  Molecular microbiology in edited by 105, 589-605 (2017) |
13. 190. B. Daubech, P. Remigi, G. Doin de Moura, M. Marchetti, C. Pouzet, M. C. Auriac, C. S. Gokhale, C. Masson-Boivin and D. Capela
  Spatio-temporal control of mutualism in legumes helps spread symbiotic nitrogen fixation.
  eLife in edited by 6, 57 (2017) |
14. 254. F. Bertels, J. Gallie and P. B. Rainey
  Identification And Characterization Of Domesticated Bacterial Transposases
  Genome Biology and Evolution in edited by 9, 2110-2121 (2017) |
2016
1. 125. K. Büttner, J. Krieter, A. Traulsen and I. Traulsen
  Epidemic spreading in an animal trade network - Comparison of distance-based and network-based control measures
  Transboundary and Emerging Diseases in edited by 63, 122-134 (2016) |
2. 126. K. Hagel, M. Abou Chakra, B. Bauer and A. Traulsen
  Which risk scenarios can drive the emergence of costly cooperation?
  Scientific Reports in edited by 6, 19269 (2016) |
3. 127. J. Pena, B. Wu and A. Traulsen
  Ordering structured populations in multiplayer cooperation games
  Journal of the Royal Society Interface in edited by 13, 20150881 (2016) |
4. 128. A. Papkou, C. S. Gokhale, A. Traulsen and H. Schulenburg
  Host-parasite coevolution: why changing population size matters.
  Zoology in edited by 119, 330-338 (2016) |
5. 129. B. Werner, A. Traulsen and D. Dingli
  Ontogenic growth as the root of fundamental differences between childhood and adult cancer
  Stem Cells in edited by 34, 543-550 (2016) |
6. 130. X. Y. Li, S. Kurokawa, S. Giaimo and A. Traulsen
  How life history can sway the fixation probability of mutants
  Genetics in edited by 203, 1297-1313 (2016) |
7. 131. B. Werner, J. Scott, A. Sottoriva, A. R. Anderson, A. Traulsen and P. M. Altrock
  The cancer stem cell fraction in hierarchically organized tumors can be estimated using mathematical modeling and patient-specific treatment trajectories
  Cancer Research in edited by 76, 1705-1713 (2016) |
8. 132. B. Wu, J. Arranz, J. Du, D. Zhou and A. Traulsen
  Evolving synergetic interactions
  Journal of The Royal Society Interface in edited by 13, 20160282 (2016) |
9. 133. L. Hindersin, M. Moeller, A. Traulsen and B. Bauer
  Exact numerical calculation of fixation probability and time on graphs
  BioSystems in edited by 150, 87-91 (2016) |
10. 134. L. Hindersin, B. Werner, D. Dingli and A. Traulsen
  Should tissue structure suppress or amplify selection to minimize cancer risk?
  Biology Direct in edited by 11, 41 (2016) |
11. 135. M. Abou Chakra, C. Hilbe and A. Traulsen
  Coevolutionary interactions between Farmers and Mafia induce host acceptance of avian brood parasites
  Royal Society Open Science in edited by 3 (2016) |
12. 136. J. Peña, B. Wu, J. Arranz and A. Traulsen
  Evolutionary Games of Multiplayer Cooperation on Graphs
  PLoS Computational Biology in edited by 12, 1-15 (2016) |
13. 172. A. Traulsen
  Biological models in game theory (Book review of Game-Theoretical Models in Biology by Mark Broom and Jan Rychtar)
  Journal of Statistical Theory and Practice in edited by 10, 472-474 (2016) |
14. 188. C. S. Gokhale and C. Hauert
  Eco-evolutionary dynamics of social dilemmas
  Theoretical Population Biology in edited by 111, 28-42 (2016) |
2015
1. 113. B. Wu, B. Bauer, T. Galla and A. Traulsen
  Fitness-based models and pairwise comparison models of evolutionary games are typically different-even in unstructured populations
  New Journal of Physics in edited by 17, 023043 (2015) |
2. 114. C. Hilbe, B. Wu, A. Traulsen and M. A. Nowak
  Evolutionary performance of zero-determinant strategies in multiplayer games
  Journal of Theoretical Biology in edited by 374, 115-124 (2015) |
3. 115. X. Y. Li, C. Pietschke, S. Fraune, P. M. Altrock, T. C. Bosch and A. Traulsen
  Which games are growing bacterial populations playing?
  Journal of The Royal Society Interface in edited by 12, 20150121 (2015) |
4. 116. X. Y. Li, S. Giaimo, A. Baudisch and A. Traulsen
  Modeling evolutionary games in populations with demographic structure
  Journal of Theoretical Biology in edited by 280, 506-515 (2015) |
5. 117. S. M. Aukema, L. Theil, M. Rohde, B. Bauer, J. Bradtke, B. Burkhardt, B. R. Bonn, A. Claviez, S. Gattenlöhner, O. Makarova, I. Nagel, I. Oschlies, C. Pott, M. Szczepanowski, A. Traulsen, P. M. Kluin, W. K., R. Siebert and E. M. Murga Penas
  Sequential karyotyping in Burkitt lymphoma reveals a linear clonal evolution with increase in karyotype complexity and a high frequency of recurrent secondary aberrations
  British Journal of Haematology in edited by 170, 814-825 (2015) |
6. 118. W. Huang, C. Hauert and A. Traulsen
  Stochastic game dynamics under demographic fluctuations.
  Proceedings of the National Academy of Sciences of the United States of America in edited by 112, 9064-9069 (2015) |
7. 119. C. Hilbe, A. Traulsen and K. Sigmund
  Partners or rivals? Strategies for the iterated prisoner's dilemma
  Games and Economic Behavior in edited by 92, 41-52 (2015) |
8. 120. Y. Song, C. S. Gokhale, A. Papkou, H. Schulenburg and A. Traulsen
  Host-parasite coevolution in populations of constant and variable size.
  BMC Evolutionary Biology in edited by 15, 212 (2015) |
9. 121. L. Hindersin and A. Traulsen
  Most undirected random graphs are amplifiers of selection for Birth-death dynamics, but suppressors of selection for death-Birth dynamics
  PLoS Computational Biology in edited by 11, e1004437 (2015) |
10. 122. Y. Pichugin, C. S. Gokhale, J. Garcia, A. Traulsen and P. B. Rainey
  Modes of migration and multilevel selection in evolutionary multiplayer games
  Journal of Theoretical Biology in edited by 387, 144-153 (2015) |
11. 123. P. Ashcroft, A. Traulsen and T. Galla
  When the mean is not enough: Calculating fixation time distributions in birth-death processes
  Physical Review E in edited by 92, 042154 (2015) |
12. 124. B. Werner, F. Beier, S. Hummel, S. Balabanov, L. Lassay, T. Orlikowsky, D. Dingli, T. H. Brümmendorf and A. Traulsen
  Reconstructing the in vivo dynamics of hematopoietic stem cells from telomere length distributions
  eLife in edited by 4, e08687 (2015) |
13. 171. J. Arranz and A. Traulsen
  Mathematical universality and direct applicability of evolutionary games: Comment on “Universal scaling for the dilemma strength in evolutionary games”, by Z. Wang et al.
  Physics of Life Reviews in edited by 24, 31-33 (2015) |
14. 187. B. Bauer and C. S. Gokhale
  Repeatability of evolution on epistatic landscapes
  Sci Rep in edited by 5, 9607 (2015) |
2014
1. 101. C. Hilbe, A. Traulsen, T. Röhl and M. Milinski
  Democratic decisions establish stable authorities that overcome the paradox of second-order punishment
  Proceedings of the National Academy of Sciences USA in edited by 111, 752-756 (2014) |
2. 102. C. Hilbe, B. Wu, A. Traulsen and M. A. Nowak
  Cooperation and control in multiplayer social dilemmas
  Proceedings of the National Academy of Sciences USA in edited by 111, 16425-16430 (2014) |
3. 103. M. Abou Chakra and A. Traulsen
  Under high stakes and uncertainty the rich should lend the poor a helping hand
  Journal of Theoretical Biology in edited by 341, 123-130 (2014) |
4. 104. M. Abou Chakra, C. Hilbe and A. Traulsen
  Plastic behaviors in hosts promote the emergence of retaliatory parasites
  Scientific Reports in edited by 4, 4251 (2014) |
5. 105. O. Hauser, A. Traulsen and M. A. Nowak
  Heterogeneity in background fitness acts as a suppressor of selection
  Journal of Theoretical Biology in edited by 343, 178-185 (2014) |
6. 106. J. Grujic, C. Gracia-Lázaro, M. Milinski, D. Semmann, A. Traulsen, J. A. Cuesta, Y. Moreno and A. Sánchez
  A comparative analysis of spatial Prisoner's Dilemma experiments: Conditional cooperation and payoff irrelevance
  Scientific Reports in edited by 4, 4615 (2014) |
7. 107. S. Schoenmakers, C. Hilbe, B. Blasius and A. Traulsen
  Sanctions as honest signals - The evolution of pool punishment by public sanctioning institutions
  Journal of Theoretical Biology in edited by 356, 36-46 (2014) |
8. 108. B. Bauer, R. Siebert and A. Traulsen
  Cancer initiation with epistatic interactions between driver and passenger mutations
  Journal of Theoretical Biology in edited by 358, 52-60 (2014) |
9. 109. J. García, M. van Veelen and A. Traulsen
  Evil green beards: Tag recognition can also be used to withhold cooperation in structured populations
  Journal of Theoretical Biology in edited by 360, 181-186 (2014) |
10. 110. L. Hindersin and A. Traulsen
  Counterintuitive properties of the fixation time in network-structured populations
  Journal of The Royal Society Interface in edited by 11, 20140606 (2014) |
11. 111. B. Werner, R. E. Gallagher, E. M. Paietta, M. R. Litzow, M. S. Tallman, P. H. Wiernik, J. L. Slack, C. L. Willman, Z. Sun, A. Traulsen and D. Dingli
  Dynamics of leukemia stem-like cell extinction in acute promyelocytic leukemia
  Cancer Res in edited by 74, 5386-5396 (2014) |
12. 112. C. S. Gokhale and A. Traulsen
  Evolutionary multiplayer games
  Dynamic Games and Applications in edited by 4, 468-488 (2014) |
13. 186. C. S. Gokhale, R. G. Reeves and F. A. Reed
  Dynamics of a combined medea-underdominant population transformation system
  BMC Evolutionary Biology in edited by 14, 98 (2014) |

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