• Recent preprints

    1. R. Zapién-Campos, F. Bansept and A. Traulsen
      Inferring interactions from microbiome data
      bioRxiv (2023) |
    2. C. Morison, M. Fic, T. Marcou, J. Mohamadichamgavi, J. Redondo Antón, G. Sayyar, A. Stein, F. Bastian, H. Krakovská, N. Krishnan, D. Pires, M. R. Satouri, F. J. Thomsen, K. Tjikundi and W. Ali
      Public Goods Games in Disease Evolution and Spread
      arXiv (2024) |
    3. N. Puzović and J. Y. Dutheil
      When is gene expression noise advantageous?
      bioRxiv (2023) |
  • 2024

    1. Z. Khomarbaghi, W. Y. Ngan, G. B. Ayan, S. Lim, G. Dechow-Seligmann, P. Nandy and J. Gallie
      Large-scale duplication events underpin population-level flexibility in tRNA gene copy number in Pseudomonas fluorescens SBW25
      Nucleic Acids Research 52, 2446-2462 (2024) |
    2. E. Mallmin, A. Traulsen and S. De Monte
      Chaotic turnover of rare and abundant species in a strongly interacting model community
      Proceedings of the National Academy of Sciences 121, e2312822121 (2024) |
    3. J. Zimmermann, A. Piecyk, M. Sieber, C. Petersen, J. Johnke, L. Moitinho-Silva, S. Kuenzel, L. Bluhm, A. Traulsen, C. Kaleta and H. Schulenburg
      Gut-associated functions are favored during microbiome assembly across a major part of C. elegans life
      mBio , in press (2024)
    4. I. Dewan and H. Uecker
      Is the distribution of plasmid lengths bimodal?
      Plasmid 129, 102721 (2024) |
    5. V. R. Venkateswaran, C. S. Gokhale, M. Mangel and S. Eliassen
      Effects of time spent in pregnancy or brooding on immunocompetence
      Ecology and Evolution 14, e10764 (2024) |
    6. J. Y. Dutheil, D. Hamidi and B. Pajot
      The Site/Group Extended Data format and tools
      Genome Biology and Evolution 16, evae011 (2024) |
    7. A. O. Leon, E. Berríos-Caro, A. León and M. G. Clerc
      Faraday kinks connecting parametric waves in magnetic wires
      Communications in Nonlinear Science and Numerical Simulation 131, 107841 (2024) |
  • 2023

    1. C. M. Saad-Roy and A. Traulsen
      Dynamics in a behavioral-epidemiological model for individual adherence to a nonpharmaceutical intervention
      Proceedings of the National Academy of Sciences 120, e2311584120 (2023) |
    2. S. Shah, L. M. Philipp, S. Giaimo, S. Sebens, A. Traulsen and M. Raatz
      Understanding and leveraging phenotypic plasticity during metastasis formation
      npj Systems Biology and Applications 9, 48 (2023) |
    3. H. Goehlich, O. Roth, M. Sieber, C. M. Chibani, A. Poehlein, J. Rajkov, H. Liesegang and C. C. Wendling
      Sub-optimal environmental conditions prolong phage epidemics in bacterial populations
      Molecular Ecology , in press (2023) |
    4. N. Sharma, S. Yagoobi and A. Traulsen
      Self-loops in Evolutionary Graph Theory: Friends or Foes?
      PLoS Computational Biology 19, e1011387 (2023) |
    5. A. Traulsen, S. A. Levin and C. M. Saad-Roy
      Individual costs and societal benefits of interventions during the COVID-19 pandemic
      Proceedings of the National Academy of Sciences 120, e2303546120 (2023) |
    6. M. Raatz and A. Traulsen
      Promoting extinction or minimizing growth? The impact of treatment on trait trajectories in evolving populations
      Evolution 77, 1408-1421 (2023) |
    7. S. Giaimo and A. Traulsen
      Generation time in stage-structured populations under fluctuating environments
      The American Naturalist 201, 404-417 (2023) |
    8. P. Verma, R. G. Reeves, S. Simon, M. Otto and C. S. Gokhale
      The effect of mating complexity on gene drive dynamics
      The American Naturalist 201, E1-E22 (2023) |
    9. P. K. Raval, W. Y. Ngan, J. Gallie and D. Agashe
      The layered costs and benefits of translational redundancy
      eLife 12, e81005 (2023)
    10. P. T. van der Gulik, M. Egas, K. Kraaijeveld, N. Dombrowski, A. T. Groot, A. Spang, W. D. Hoff and J. Gallie
      On distinguishing between canonical tRNA genes and tRNA gene fragments in prokaryotes
      RNA Biology 20, 48-58 (2023) |
    11. S. Yagoobi, N. Sharma and A. Traulsen
      Categorizing update mechanisms for graph-structured metapopulations
      Journal of the Royal Society Interface 20, 20220769 (2023) |
    12. K. Y. Han, L. Kröger, F. Buchholz, I. Dewan, M. Quaas, H. Schulenburg and T. B. Reusch
      The economics of microbiodiversity
      Ecological Economics 204, Part A (2023) |
    13. M. A. Ramirez, M. Smerlak, A. Traulsen and J. Jost
      Diversity enables the jump towards cooperation for the Traveler's Dilemma
      Scientific Reports 13, 1441 (2023) |
    14. C. Nyhoegen and H. Uecker
      Sequential antibiotic therapy in the laboratory and in the patient
      Journal of the Royal Society Interface 20, 20220793 (2023) |
    15. A. Traulsen and N. Glynatsi
      The future of theoretical evolutionary game theory
      Philosophical Transactions of the Royal Society B 378, 20210508 (2023) |
    16. G. J. Kimmel, R. J. Beck, X. Yu, T. Veith, S. Bakhoum, P. M. Altrock and N. Andor
      Intra-tumor heterogeneity, turnover rate and karyotype space shape susceptibility to missegregation-induced extinction
      PLOS Computational Biology 19, e1010815 (2023) |
    17. S. Giaimo
      On two conjectures about perturbations of the stochastic growth rate
      Australian & New Zealand Journal of Statistics 65, 1-13 (2023) |
    18. Y. Ma, J. He, M. Sieber, J. von Frieling, I. Bruchhaus, J. F. Baines, U. Bickmeyer and T. Roeder
      The microbiome of the marine flatworm Macrostomum lignano provides fitness advantages and exhibits circadian rhythmicity
      Communications Biology 6, 289 (2023) |
    19. D. Hoces, G. Greter, M. Arnoldini, M. L. Stäubli, C. Moresi, A. Sintsova, S. Berent, I. Kolinko, F. Bansept, A. Woller, J. Häfliger, E. Martens, W. D. Hardt, S. Sunagawa, C. Loverdo and E. Slack
      Fitness advantage of Bacteroides thetaiotaomicron capsular polysaccharide in the mouse gut depends on the resident microbiota
      eLife 12, e81212 (2023)
    20. J. Fraboul, G. Biroli and S. De Monte
      Artificial selection of communities drives the emergence of structured interactions
      Journal of Theoretical Biology 571, 111557 (2023)
    21. T. N. Sherratt, I. Dewan and J. Skelhorn
      The optimal time to approach an unfamiliar object: a Bayesian model
      Behavioral Ecology , arad032 (2023) |
    22. I. Dewan and H. Uecker
      A mathematician’s guide to plasmids: an introduction to plasmid biology for modellers
      Microbiology 169, 001362 (2023)
    23. D. Lauenroth and C. S. Gokhale
      Theoretical assessment of persistence and adaptation in weeds with complex life cycles
      Nature Plants 9, 1267-1279 (2023) |
    24. N. Obeng, A. Czerwinski, D. Schütz, J. Michels, J. Leipert, F. Bansept, M. J. García García, T. Schultheiss, M. Kemlein, J. Fuß, A. Tholey, A. Traulsen, H. Sondermann and H. Schulenburg
      Bacterial c-di-GMP has a key role in establishing host–microbe symbiosis
      Nature Microbiology 8, 1809–1819 (2023) |
    25. C. S. Gokhale and N. Sharma
      Optimizing crop rotations via Parrondo's paradox for sustainable agriculture
      Royal Society Open Science 10, 221401 (2023) |
  • 2022

    1. R. Zapién-Campos, F. Bansept, M. Sieber and A. Traulsen
      On the effect of inheritance of microbes in commensal microbiomes
      BMC Ecology and Evolution 22 (2022) |
    2. Y. Gao, Y. Pichugin, C. S. Gokhale and A. Traulsen
      Evolution of reproductive strategies in incipient multicellularity
      Journal of The Royal Society Interface 19 (2022) |
    3. F. Geoffroy, A. Traulsen and H. Uecker
      Vaccination strategies when vaccines are scarce: on conflicts between reducing the burden and avoiding the evolution of escape mutants
      Journal of The Royal Society Interface 19 (2022) |
    4. G. Lobinska, A. Pauzner, A. Traulsen, Y. Pilpel and M. A. Nowak
      Evolution of resistance to COVID-19 vaccination with dynamic social distancing
      Nature Human Behaviour 6, 193-206 (2022) |
    5. Y. Pichugin and A. Traulsen
      The possible modes of microbial reproduction are fundamentally restricted by distribution of mass between parent and offspring
      Proceedings of the National Academy of Sciences 119, e2122197119 (2022) |
    6. A. Traulsen, C. S. Gokhale, S. Shah and H. Uecker
      The Covid-19 pandemic: Basic insights from basic mathematical models
      Nova Acta Leopoldina 2022 (2022) |
    7. R. Zapién-Campos, M. Sieber and A. Traulsen
      The effect of microbial selection on the occurrence-abundance patterns of microbiomes
      Journal of The Royal Society Interface 19, 20210717 (2022) |
    8. S. Giaimo and A. Traulsen
      The selection force weakens with age because ageing evolves and not vice versa
      Nature Communications 13, 686 (2022) |
    9. P. Nandy
      The role of sigma factor competition in bacterial adaptation under prolonged starvation
      Microbiology 168 (2022) |
    10. N. Sharma and A. Traulsen
      Suppressors of fixation can increase average fitness beyond amplifiers of selection
      Proceedings of the National Academy of Sciences 119, e2205424119 (2022) |
    11. V. Ress, A. Traulsen and Y. Pichugin
      Eco-evolutionary dynamics of clonal multicellular life cycles
      Elife 11, e78822 (2022) |
    12. A. K. Fahimipour, F. Zeng, M. Homer, A. Traulsen, S. A. Levin and T. Gross
      Sharp thresholds limit the benefit of defector avoidance in cooperation on networks
      Proceedings of the National Academy of Sciences 119, e2120120119 (2022) |
    13. M. C. Ferrall-Fairbanks, A. Dhawan, B. Johnson, H. Newman, V. Volpe, C. Letson, M. Ball, A. M. Hunter, M. E. Balasis, T. Kruer, N. A. Ben-Crentsil, J. L. Kroeger, R. Balderas, R. S. Komrokji, D. A. Sallman, J. Zhang, R. Bejar, P. M. Altrock and E. Padron
      Progenitor hierarchy of chronic myelomonocytic leukemia identifies inflammatory monocytic-biased trajectory linked to worse outcomes
      Blood Cancer Discovery (AACR) 3, 536-553 (2022)
    14. C. S. Gokhale, J. Bulbulia and M. Frean
      Collective narratives catalyse cooperation
      Humanities and Social Sciences Communications 9, 85 (2022) |
    15. A. Gupta, L. Zaman, H. Strobel, J. Gallie, A. R. Burmeister, B. Kerr, E. S. Tamar, R. Kishony and J. R. Meyer
      Host-parasite coevolution promotes innovation through deformations in fitness landscapes
      eLife 11, e76162 (2022)
    16. A. Mukherjee, G. Dechow-Seligmann and J. Gallie
      Evolutionary flexibility in routes to mat formation by Pseudomonas
      Molecular Microbiology 117, 394-410 (2022) |
    17. M. Santer, A. Kupczok, T. Dagan and H. Uecker
      Fixation dynamics of beneficial alleles in prokaryotic polyploid chromosomes and plasmids
      Genetics 222, iyac121 (2022) |
    18. C. Pansch, M. Raatz, S. Comeau, T. T. Y. Hui, and C. E. Cornwall
      Influence of environmental variability on climate change impacts in marine ecosystems
      Frontiers in Marine Science 9, 994756 (2022)
    19. A. de Azevedo-Lopes, R. A. Almeida, P. M. C. de Oliveira and J. J. Arenzon
      Energy-lowering and constant-energy spin flips: Emergence of the percolating cluster in the kinetic Ising model
      Physical Review E 106, 044105 (2022) |
    20. S. Giaimo and A. Traulsen
      Age-specific sensitivity analysis of transient, stable and stochastic growth for stage-classified populations
      Ecology and Evolution 12, e9561 (2022) |
    21. E. Mallmin
      Comments on: “Every variance function ... can be produced by any location-scale family ...”
      Theoretical Ecology 15, 283-284 (2022) |
    22. S. Giaimo
      Selection on age-specific survival: Constant versus fluctuating environment
      Theoretical Population Biology 145, 136-149 (2022) |
    23. V. Ress, A. Traulsen and Y. Pichugin
      Eco-evolutionary dynamics of clonal multicellular life cycles
      Elife 11, e78822 (2022)
    24. D. Reyes-González, H. De Luna-Valenciano, J. Utrilla, M. Sieber, R. Peña-Miller and A. Fuentes-Hernández
      Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia
      Royal Society Open Science 9, 212008 (2022) |
    25. C. C. Wendling, J. Lange, H. Liesegang, M. Sieber, A. Poehlein, B. Bunk, J. Rajkov, H. Goehlich, O. Roth and M. A. Brockhurst
      Higher phage virulence accelerates the evolution of host resistance
      Proceedings of the Royal Society B 289, 20221070 (2022) |
  • 2021

    1. P. Verma, R. G. Reeves and C. S. Gokhale
      A common gene drive language eases regulatory process and eco-evolutionary extensions
      BMC Ecology and Evolution 21, 156 (2021) |
    2. H. Uecker and S. Bonhoeffer
      Antibiotic treatment protocols revisited: The challenges of a conclusive assessment by mathematical modeling
      Journal of The Royal Society Interface 18, doi: (2021) |
    3. P. Czuppon and A. Traulsen
      Understanding evolutionary and ecological dynamics using a continuum limit
      Ecology and Evolution 11, 5857-5873 (2021) |
    4. M. Raatz, S. Shah, G. Chitadze, M. Brüggemann and A. Traulsen
      The impact of phenotypic heterogeneity of tumour cells on treatment and relapse dynamics
      PLoS Computational Biology 17, e1008702 (2021) |
    5. M. Sieber, A. Traulsen, H. Schulenburg and A. E. Douglas
      On the evolutionary origins of host-microbe associations
      Proceedings of the National Academy of Sciences 118, e2016487118 (2021) |
    6. S. Yagoobi and A. Traulsen
      Fixation probabilities in network structured meta-populations
      Scientific Reports 11, 1-9 (2021) |
    7. J. W. Lightfood, M. Dardiry, A. Kalirad, S. Giaimo, G. Eberhard, H. Witte, M. Wilecki, C. Roedelsperger, A. Traulsen and R. J. Sommer
      Sex or cannibalism: Polyphenism and kin recognition control social action strategies in nematodes
      Science Advances 7, 35 (2021) |
    8. F. Bansept, N. Obeng, H. Schulenburg and A. Traulsen
      Modeling host-associating microbes under selection
      The ISME Journal , 1-9 (2021) |
    9. N. Obeng, F. Bansept, M. Sieber, A. Traulsen and H. Schulenburg
      Evolution of microbiota-host associations: the microbe's perspective
      Trends in Microbiology 29, 779-787 (2021)
    10. S. Giaimo and A. Traulsen
      Applying symmetries of elasticities in matrix population models
      Theoretical Ecology 14, 359-366 (2021) |
    11. A. Traulsen and M. Sieber
      Evolutionary ecology theory — microbial population structure
      Current Opinion in Microbiology 63, 216-220 (2021)
    12. Y. Gao, H. J. Park, A. Traulsen and Y. Pichugin
      Evolution of irreversible somatic differentiation
      eLife 10, e66711 (2021)
    13. M. Lagator, H. Uecker and P. Neve
      Adaptation at different points along antibiotic concentration gradients
      Biology Letters 17 (2021) |
    14. P. Czuppon, F. Blanquart, H. Uecker and F. Dèbarre
      The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations
      The American Naturalist 197 (2021) |
    15. F. Mafessoni, M. Lachmann and C. S. Gokhale
      On the fitness of informative cues in complex environments
      Journal of Theoretical Biology 527 (2021) |
    16. C. S. Gokhale, S. Giaimo and P. Remigi
      Memory shapes microbial populations
      PLoS Computational Biology 17, e1009431 (2021) |
    17. A. R. Burmeister, R. M. Sulivan, J. Gallie and R. E. Lenski
      Sustained coevolution of phage Lambda and Escherichia coli involves inner- as well as outer-membrane defences and counter-defences
      Microbiology 167, 001063 (2021)
    18. J. Vajedsamiei, F. Melzner, M. Raatz, S. Moron Lugo and C. Pansch
      Cyclic thermal fluctuations can be burden or relief for an ectotherm depending on fluctuations' average and amplitude
      Functional Ecology 35, 2483-2496 (2021) |
    19. J. Vajedsamiei, F. Melzner, M. Raatz, R. Kiko, M. Khosravi and C. Pansch
      Simultaneous recording of filtration and respiration in marine organisms in response to short-term environmental variability
      Limnology and Oceanography: Methods 19, 196-209 (2021) |
  • 2020

    1. H. Schenk, H. Schulenburg and A. Traulsen
      How long do Red Queen dynamics survive under genetic drift? A comparative analysis of evolutionary and eco-evolutionary models
      BMC Evolutionary Biology 20, (2020) |
    2. M. Bargués-Ribera and C. S. Gokhale
      Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations
      PLoS Computational Biology 16, e1007546 (2020) |
    3. J. A. Denton and C. S. Gokhale
      Promoting Synthetic Symbiosis under Environmental Disturbances
      mSystems 5, e00187-20 (2020) |
    4. H. J. Park, C. S. Gokhale and F. Bertels
      How sequence populations persist inside a genome
      Genetics 217 (2020) |
    5. C. J. Rose, K. Hammerschmidt, Y. Pichugin and P. B. Rainey
      Meta-population structure and the evolutionary transition to multicellularity
      Ecology Letters 23, 1380-1390 (2020) |
    6. M. Santer and H. Uecker
      Evolutionary Rescue and Drug Resistance on Multicopy Plasmids
      Genetics 215, 847-868 (2020) |
    7. G. B. Ayan, H. J. Park and J. gallie
      The birth of a bacterial tRNA gene
      eLife 9, e57947 (2020) |
    8. R. Zapién-Campos, M. Sieber and A. Traulsen
      Stochastic colonization of hosts with a finite lifespan can drive individual host microbes out of equilibrium
      PLoS Computational Biology 16, e1008392 (2020) |
    9. H. J. Park, Y. Pichugin and A. Traulsen
      Why is cyclic dominance so rare?
      eLife 9, 10.7554/eLife.57857 (2020)
    10. Y. Pichugin and A. Traulsen
      Evolution of multicellular life cycles under costly fragmentation
      PLOS Computational Biology 16, e1008406 (2020) |
    11. L. Opasic, J. G. Scott, A. Traulsen and C. Fortmann-Grote
      CancerSim: A Cancer Simulation Package for Python 3
      Journal of Open Source Software 5, 2436 (2020)
    12. C. Roecken, A. Amallraja, C. Halske, L. Opasic, A. Traulsen, H. M. Behrens, S. Krueger, A. Lui, J. Haag, J. H. Egberts, P. Rosenstiel and T. Meissner
      Multiscale heterogeneity in gastric adenocarcinoma evolution is an obstacle to precision medicine
      Genome Medicine 13, 177 (2020) |
    13. S. Pathak, P. Verma, S. K. Ram and S. Sengupta
      How strategy environment and wealth shape altruistic behaviour: cooperation rules affecting wealth distribution in dynamic networks
      Proceedings of the Royal Society B: Biological Sciences 287 (2020) |
  • 2019

    1. H. J. Park, Y. Pichugin, W. Huang and A. Traulsen
      Population size changes and extinction risk of populations driven by mutant interactors
      Phys. Rev. E 99, 022305 (2019) |
    2. D. Esser, J. Lange, G. Marinos, M. Sieber, L. Best, D. Prasse, J. Bathia, M. C. Rühlemann, K. Boersch, C. Jaspers and F. Sommer
      Functions of the microbiota for the physiology of animal metaorganisms
      Journal of Innate Immunity 11, 393-404 (2019) |
    3. H. J. Park and C. S. Gokhale
      Ecological feedback on diffusion dynamics
      Royal Society Open Science 6, 181273 (2019) |
    4. J. A. Denton and C. S. Gokhale
      Synthetic Mutualism and the Intervention Dilemma
      Life 9, 15 (2019) |
    5. Y. Gao, A. Traulsen and Y. Pichugin
      Interacting cells driving the evolution of multicellular life cycles
      PLoS Computational Biology 15, e1006987 (2019) |
    6. M. Sieber, L. Pita, N. Weiland-Brauer, P. Dirksen, J. Wang, B. Mortzfeld, S. Franzenburg, R. A. Schmitz, J. F. Baines, S. Fraune, U. Hentschel, H. Schulenburg, T. C. G. Bosch and A. Traulsen
      Neutrality in the Metaorganism
      PLoS Biology 17, e3000298 (2019) |
    7. Y. Pichugin, H. J. Park and A. Traulsen
      Evolution of simple multicellular life cycles in dynamic environments
      Journal of the Royal Society Interface 16, 154 (2019) |
    8. M. Möller, L. Hindersin and A. Traulsen
      Exploring and mapping the universe of evolutionary graphs identifies structural properties affecting fixation probability and time
      Communications Biology 2 (2019) |
    9. L. Opasic, D. Zhou, B. Werner, D. Dingli and A. Traulsen
      How many samples are needed to infer truly clonal mutations from heterogenous tumours?
      BMC Cancer 19, 403 (2019) |
    10. L. Hindersin, B. Wu, A. Traulsen and J. Garcia
      Computation and Simulation of Evolutionary Game Dynamics in Finite Populations
      Scientific Reports 9 (2019) |
    11. S. Giaimo and A. Traulsen
      Generation time measures the trade-off between survival and reproduction in a life cycle
      The American Naturalist 194, 285-290 (2019) |
    12. H. Schaefer, A. Traulsen and S. Sebens
      Killer on the road?—cells from pancreatic preneoplastic lesions disseminate through pancreatic ducts on their way to cancer
      HepatoBiliary Surgery and Nutrition , doi: 10.21037/hbsn.2019.06.03 (2019)
    13. J. Garcia and A. Traulsen
      Evolution of coordinated punishment to enforce cooperation from an unbiased strategy space
      Interface 16, 156 (2019) |
    14. D. Zhou, Y. Luo, D. Dingli and A. Traulsen
      The invasion of de-differentiating cancer cells into hierarchical tissues
      PLoS Computational Biology 15, e1007167 (2019)
    15. Z. Zhang, D. P. Bendixsen, T. Janzen, A. W. Nolte, D. Greig and R. Stelkens
      Recombining Your Way Out of Trouble: The Genetic Architecture of Hybrid Fitness under Environmental Stress
      Molecular Biology and Evolution 37, 167-182 (2019) |
    16. V. R. Venkateswaran and C. S. Gokhale
      Evolutionary dynamics of complex multiple games
      Proceedings of the Royal Society B: Biological Sciences 286, 20190900 (2019) |
    17. J. Scire, N. Hozé and H. Uecker
      Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels
      PLoS Computational Biology 15, e1007223 (2019) |
    18. P. Czuppon and D. W. Rogers
      Evolution of mating types in finite populations: The precarious advantage of being rare
      Journal of Evolutionary Biology 32, 1290-1299 (2019) |
    19. V. R. Venkateswaran and C. S. Gokhale
      Evolutionary dynamics of complex multiple games
      Proceedings of the Royal Society B: Biological Sciences 286, 20190900 (2019) |
    20. J. Gallie, F. Bertels, P. Remigi, G. C. Ferguson, S. Nestmann and P. B. Rainey
      Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25
      Molecular Biology and Evolution 36, 1071-1085 (2019)
  • 2018

    1. S. Giaimo, X. Y. Li, A. Traulsen and A. Baudisch
      From stable coexistence to demographic heterogeneity
      Demographic Research 38, 197-226 (2018) |
    2. T. Janzen, A. Nolte and A. Traulsen
      The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites
      Evolution 72, 735-750 (2018) |
    3. M. A. Boettcher, J. Held-Feindt, M. Synowitz, R. Lucius, A. Traulsen and K. Hattermann
      Modeling treatment-dependent glioma growth respecting a dormant cell subpopulation
      BMC Cancer 18, 376 (2018) |
    4. M. Abou Chakra, S. Bumann, H. Schenk, A. Oschlies and A. Traulsen
      Immediate action is the best strategy when facing uncertain climate change
      Nature Communications 9, 2566 (2018) |
    5. P. Czuppon and A. Traulsen
      Fixation probabilities in populations under demographic fluctuations
      Journal of Mathematical Biology 77, 1233-1277 (2018) |
    6. M. Boettcher, D. Dingli, B. Werner and A. Traulsen
      Replicative cellular age distributions in compartmentalised tissues
      Journal of the Royal Society Interface 15 (2018) |
    7. R. Roemhild, C. S. Gokhale, P. Dirksen, C. Blake, P. Rosenstiel, A. Traulsen, D. I. Andersson and H. Schulenburg
      Cellular hysteresis as a novel principle to maximize the efficacy of antibiotic therapy
      Proceedings of the National Academy of Sciences 115, 9767-9772 (2018) |
    8. M. Raatz, S. Schälicke, M. Sieber, A. Wacker and U. Gaedke
      One man's trash is another man's treasure-the effect of bacteria on phytoplankton-zooplankton interactions in chemostat systems
      Limnology and Oceanography: Methods 16, 629-639 (2018) |
    9. S. Giaimo, J. Arranz and A. Traulsen
      Invasion and effective size of graph-structured populations
      PLoS Computational Biology 14, e1006559 (2018) |
    10. A. Traulsen
      Die Evolution und der Zusammenbruch von Kooperation: Wie Einzelne das Gemeinwohl gefährden können
      in Rationale Entscheidungen unter Unsicherheit, edited by Fleischer, B. and Lauterbach, R. and Pawlik, K. (2018) |
    11. A. Alzate, T. Janzen, D. Bonte, J. Rosindell and R. S. Etienne
      A simple spatially explicit neutral model explains the range size distribution of reef fishes
      Global Ecology and Biogeography , 1-16 (2018) |
    12. P. Czuppon and C. S. Gokhale
      Disentangling eco-evolutionary effects on trait fixation.
      Theoretical Population Biology 124, 93-107 (2018) |
    13. H. Uecker
      Effectively Evolution-proof Antibiotics?
      Trends in Microbiology 26, 969-970 (2018) |
  • 2017

    1. P. M. Altrock, A. Traulsen and M. A. Nowak
      Evolutionary games on cycle graphs under strong selection
      Physical Review E 95, 022407 (2017) |
    2. F. Bertels, C. S. Gokhale and A. Traulsen
      Discovering complete quasispecies in bacterial genomes
      Genetics 206, 4 2149-2157 (2017) |
    3. D. W. Rogers, M. A. Böttcher, A. Traulsen and D. Greig
      Ribosome reinitiation can explain length-dependent translation of messenger RNA
      PLoS Computational Biology 13, e1005592 (2017) |
    4. B. Werner, A. Traulsen, A. Sottoriva and D. Dingli
      Detecting truly clonal alterations from multi-region profiling of tumours
      Scientific Reports 7, 44991 (2017) |
    5. C. S. Gokhale, A. Traulsen and G. Joop
      Social dilemma in the external immune system of the red flour beetle? It is a matter of time
      Ecology and Evolution 7, 6758-6765 (2017) |
    6. H. J. Park and A. Traulsen
      Extinction dynamics from meta-stable coexistences
      Physical Review E 96, 042412 (2017) |
    7. M. Vallier, M. Abou Chakra, L. Hindersin, M. Linnenbrink, A. Traulsen and J. F. Baines
      Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice
      BMC Evolutionary Biology 17, 87 (2017) |
    8. X. Y. Li, T. Lachnit, S. Fraune, T. Bosch, A. Traulsen and M. Sieber
      Temperate phages as self-replicating weapons in bacterial competition
      Journal of the Royal Society Interface 14, 137 (2017) |
    9. W. Huang, A. Traulsen, B. Werner, T. Hiltunen and L. Becks
      Dynamical trade-offs arise from species coevolution and lower the species diversity
      Nature Communications 8, 2059 (2017) |
    10. Y. Pichugin, J. Peña, P. B. Rainey and A. Traulsen
      Fragmentation modes and the evolution of life cycles
      PLoS Computational Biology 13, e1005860 (2017) |
    11. H. Schenk, A. Traulsen and C. S. Gokhale
      Chaotic provinces in the kingdom of the Red Queen
      Journal of Theoretical Biology 431, 1-10 (2017) |
    12. Y. Liu, C. S. Gokhale, P. B. Rainey and X. X. Zhang
      Unravelling the complexity and redundancy of carbon catabolic repression in Pseudomonas fluorescens SBW25
      Molecular microbiology 105, 589-605 (2017) |
    13. B. Daubech, P. Remigi, G. Doin de Moura, M. Marchetti, C. Pouzet, M. C. Auriac, C. S. Gokhale, C. Masson-Boivin and D. Capela
      Spatio-temporal control of mutualism in legumes helps spread symbiotic nitrogen fixation.
      eLife 6, 57 (2017) |
    14. F. Bertels, J. Gallie and P. B. Rainey
      Identification And Characterization Of Domesticated Bacterial Transposases
      Genome Biology and Evolution 9, 2110-2121 (2017)
  • 2016

    1. K. Büttner, J. Krieter, A. Traulsen and I. Traulsen
      Epidemic spreading in an animal trade network - Comparison of distance-based and network-based control measures
      Transboundary and Emerging Diseases 63, 122-134 (2016) |
    2. K. Hagel, M. Abou Chakra, B. Bauer and A. Traulsen
      Which risk scenarios can drive the emergence of costly cooperation?
      Scientific Reports 6, 19269 (2016)
    3. J. Pena, B. Wu and A. Traulsen
      Ordering structured populations in multiplayer cooperation games
      Journal of the Royal Society Interface 13, 20150881 (2016) |
    4. A. Papkou, C. S. Gokhale, A. Traulsen and H. Schulenburg
      Host-parasite coevolution: why changing population size matters.
      Zoology 119, 330-338 (2016) |
    5. B. Werner, A. Traulsen and D. Dingli
      Ontogenic growth as the root of fundamental differences between childhood and adult cancer
      Stem Cells 34, 543-550 (2016) |
    6. X. Y. Li, S. Kurokawa, S. Giaimo and A. Traulsen
      How life history can sway the fixation probability of mutants
      Genetics 203, 1297-1313 (2016) |
    7. B. Werner, J. Scott, A. Sottoriva, A. R. Anderson, A. Traulsen and P. M. Altrock
      The cancer stem cell fraction in hierarchically organized tumors can be estimated using mathematical modeling and patient-specific treatment trajectories
      Cancer Research 76, 1705-1713 (2016) |
    8. B. Wu, J. Arranz, J. Du, D. Zhou and A. Traulsen
      Evolving synergetic interactions
      Journal of The Royal Society Interface 13, 20160282 (2016) |
    9. L. Hindersin, M. Moeller, A. Traulsen and B. Bauer
      Exact numerical calculation of fixation probability and time on graphs
      BioSystems 150, 87-91 (2016) |
    10. L. Hindersin, B. Werner, D. Dingli and A. Traulsen
      Should tissue structure suppress or amplify selection to minimize cancer risk?
      Biology Direct 11, 41 (2016) |
    11. M. Abou Chakra, C. Hilbe and A. Traulsen
      Coevolutionary interactions between Farmers and Mafia induce host acceptance of avian brood parasites
      Royal Society Open Science 3 (2016) |
    12. J. Peña, B. Wu, J. Arranz and A. Traulsen
      Evolutionary Games of Multiplayer Cooperation on Graphs
      PLoS Computational Biology 12, 1-15 (2016) |
    13. A. Traulsen
      Biological models in game theory (Book review of Game-Theoretical Models in Biology by Mark Broom and Jan Rychtar)
      Journal of Statistical Theory and Practice 10, 472-474 (2016)
    14. C. S. Gokhale and C. Hauert
      Eco-evolutionary dynamics of social dilemmas
      Theoretical Population Biology 111, 28-42 (2016) |
  • 2015

    1. B. Wu, B. Bauer, T. Galla and A. Traulsen
      Fitness-based models and pairwise comparison models of evolutionary games are typically different-even in unstructured populations
      New Journal of Physics 17, 023043 (2015) |
    2. C. Hilbe, B. Wu, A. Traulsen and M. A. Nowak
      Evolutionary performance of zero-determinant strategies in multiplayer games
      Journal of Theoretical Biology 374, 115-124 (2015) |
    3. X. Y. Li, C. Pietschke, S. Fraune, P. M. Altrock, T. C. Bosch and A. Traulsen
      Which games are growing bacterial populations playing?
      Journal of The Royal Society Interface 12, 20150121 (2015) |
    4. X. Y. Li, S. Giaimo, A. Baudisch and A. Traulsen
      Modeling evolutionary games in populations with demographic structure
      Journal of Theoretical Biology 280, 506-515 (2015) |
    5. S. M. Aukema, L. Theil, M. Rohde, B. Bauer, J. Bradtke, B. Burkhardt, B. R. Bonn, A. Claviez, S. Gattenlöhner, O. Makarova, I. Nagel, I. Oschlies, C. Pott, M. Szczepanowski, A. Traulsen, P. M. Kluin, W. K., R. Siebert and E. M. Murga Penas
      Sequential karyotyping in Burkitt lymphoma reveals a linear clonal evolution with increase in karyotype complexity and a high frequency of recurrent secondary aberrations
      British Journal of Haematology 170, 814-825 (2015) |
    6. W. Huang, C. Hauert and A. Traulsen
      Stochastic game dynamics under demographic fluctuations.
      Proceedings of the National Academy of Sciences of the United States of America 112, 9064-9069 (2015) |
    7. C. Hilbe, A. Traulsen and K. Sigmund
      Partners or rivals? Strategies for the iterated prisoner's dilemma
      Games and Economic Behavior 92, 41-52 (2015) |
    8. Y. Song, C. S. Gokhale, A. Papkou, H. Schulenburg and A. Traulsen
      Host-parasite coevolution in populations of constant and variable size.
      BMC Evolutionary Biology 15, 212 (2015) |
    9. L. Hindersin and A. Traulsen
      Most undirected random graphs are amplifiers of selection for Birth-death dynamics, but suppressors of selection for death-Birth dynamics
      PLoS Computational Biology 11, e1004437 (2015) |
    10. Y. Pichugin, C. S. Gokhale, J. Garcia, A. Traulsen and P. B. Rainey
      Modes of migration and multilevel selection in evolutionary multiplayer games
      Journal of Theoretical Biology 387, 144-153 (2015) |
    11. P. Ashcroft, A. Traulsen and T. Galla
      When the mean is not enough: Calculating fixation time distributions in birth-death processes
      Physical Review E 92, 042154 (2015) |
    12. B. Werner, F. Beier, S. Hummel, S. Balabanov, L. Lassay, T. Orlikowsky, D. Dingli, T. H. Brümmendorf and A. Traulsen
      Reconstructing the in vivo dynamics of hematopoietic stem cells from telomere length distributions
      eLife 4, e08687 (2015)
    13. J. Arranz and A. Traulsen
      Mathematical universality and direct applicability of evolutionary games: Comment on “Universal scaling for the dilemma strength in evolutionary games”, by Z. Wang et al.
      Physics of Life Reviews 24, 31-33 (2015) |
    14. B. Bauer and C. S. Gokhale
      Repeatability of evolution on epistatic landscapes
      Sci Rep 5, 9607 (2015) |
  • 2014

    1. C. Hilbe, A. Traulsen, T. Röhl and M. Milinski
      Democratic decisions establish stable authorities that overcome the paradox of second-order punishment
      Proceedings of the National Academy of Sciences USA 111, 752-756 (2014) |
    2. C. Hilbe, B. Wu, A. Traulsen and M. A. Nowak
      Cooperation and control in multiplayer social dilemmas
      Proceedings of the National Academy of Sciences USA 111, 16425-16430 (2014) |
    3. M. Abou Chakra and A. Traulsen
      Under high stakes and uncertainty the rich should lend the poor a helping hand
      Journal of Theoretical Biology 341, 123-130 (2014) |
    4. M. Abou Chakra, C. Hilbe and A. Traulsen
      Plastic behaviors in hosts promote the emergence of retaliatory parasites
      Scientific Reports 4, 4251 (2014) |
    5. O. Hauser, A. Traulsen and M. A. Nowak
      Heterogeneity in background fitness acts as a suppressor of selection
      Journal of Theoretical Biology 343, 178-185 (2014) |
    6. J. Grujic, C. Gracia-Lázaro, M. Milinski, D. Semmann, A. Traulsen, J. A. Cuesta, Y. Moreno and A. Sánchez
      A comparative analysis of spatial Prisoner's Dilemma experiments: Conditional cooperation and payoff irrelevance
      Scientific Reports 4, 4615 (2014) |
    7. S. Schoenmakers, C. Hilbe, B. Blasius and A. Traulsen
      Sanctions as honest signals - The evolution of pool punishment by public sanctioning institutions
      Journal of Theoretical Biology 356, 36-46 (2014) |
    8. B. Bauer, R. Siebert and A. Traulsen
      Cancer initiation with epistatic interactions between driver and passenger mutations
      Journal of Theoretical Biology 358, 52-60 (2014) |
    9. J. García, M. van Veelen and A. Traulsen
      Evil green beards: Tag recognition can also be used to withhold cooperation in structured populations
      Journal of Theoretical Biology 360, 181-186 (2014) |
    10. L. Hindersin and A. Traulsen
      Counterintuitive properties of the fixation time in network-structured populations
      Journal of The Royal Society Interface 11, 20140606 (2014) |
    11. B. Werner, R. E. Gallagher, E. M. Paietta, M. R. Litzow, M. S. Tallman, P. H. Wiernik, J. L. Slack, C. L. Willman, Z. Sun, A. Traulsen and D. Dingli
      Dynamics of leukemia stem-like cell extinction in acute promyelocytic leukemia
      Cancer Res 74, 5386-5396 (2014) |
    12. C. S. Gokhale and A. Traulsen
      Evolutionary multiplayer games
      Dynamic Games and Applications 4, 468-488 (2014) |
    13. C. S. Gokhale, R. G. Reeves and F. A. Reed
      Dynamics of a combined medea-underdominant population transformation system
      BMC Evolutionary Biology 14, 98 (2014) |